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RNU4-71P RNA, U4 small nuclear 71, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481194, updated on 10-Oct-2023

Summary

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Official Symbol
RNU4-71Pprovided by HGNC
Official Full Name
RNA, U4 small nuclear 71, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47007
See related
Ensembl:ENSG00000252067 AllianceGenome:HGNC:47007
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU4-71P in Genome Data Viewer
Location:
8p21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (23600026..23600138, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (23874956..23875068, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (23457539..23457651, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ENTPD4 divergent transcript Neighboring gene uncharacterized LOC105379327 Neighboring gene CRISPRi-validated cis-regulatory element chr8.847 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27119 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19026 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:23399784-23400565 Neighboring gene solute carrier family 25 member 37 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:23407857-23408358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27121 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19027 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19028 Neighboring gene SINHCAF pseudogene 3 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:23507883-23508510 Neighboring gene uncharacterized LOC107986930 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19029 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19030 Neighboring gene NK3 homeobox 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043263.1 

    Range
    101..213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    23600026..23600138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    23874956..23875068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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