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RNU4-41P RNA, U4 small nuclear 41, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481184, updated on 10-Oct-2023

Summary

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Official Symbol
RNU4-41Pprovided by HGNC
Official Full Name
RNA, U4 small nuclear 41, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46977
See related
Ensembl:ENSG00000201296 AllianceGenome:HGNC:46977
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
12q23.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (98417896..98418038, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (98391158..98391300, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (98811674..98811816, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene SIN3-HDAC complex associated factor pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:98718309-98719017 Neighboring gene uncharacterized LOC105369933 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr12:98734685-98735884 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr12:98738483-98739682 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:98779458-98779959 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr12:98792630-98793829 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4750 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_31344 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4751 Neighboring gene solute carrier family 9 member 7 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:98857507-98857880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6840 Neighboring gene uncharacterized LOC124902994

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043170.1 

    Range
    101..243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    98417896..98418038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    98391158..98391300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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