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RNU6ATAC23P RNA, U6atac small nuclear 23, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481166, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6ATAC23Pprovided by HGNC
Official Full Name
RNA, U6atac small nuclear 23, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46922
See related
Ensembl:ENSG00000221375 AllianceGenome:HGNC:46922
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
Xq27.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (139885481..139885603)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (138197403..138197525)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (138967640..138967762)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene MCF.2 cell line derived transforming sequence Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21035 Neighboring gene Sharpr-MPRA regulatory region 14619 Neighboring gene brain cytoplasmic RNA 1, pseudogene 1 Neighboring gene ATPase phospholipid transporting 11C Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21036 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 21037 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30004 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 30005 Neighboring gene microRNA 505 Neighboring gene chromosome X open reading frame 66

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043019.1 

    Range
    101..223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    139885481..139885603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    138197403..138197525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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