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RN7SL177P RNA, 7SL, cytoplasmic 177, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480969, updated on 10-Oct-2023

Summary

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Official Symbol
RN7SL177Pprovided by HGNC
Official Full Name
RNA, 7SL, cytoplasmic 177, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46193
See related
Ensembl:ENSG00000242976 AllianceGenome:HGNC:46193
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
5q33.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (153755382..153755680)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (154288591..154288889)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (153134942..153135240)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG hESC enhancer GRCh37_chr5:152022318-152022903 Neighboring gene tRNA-Cys (anticodon ACA) 1-1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:152038685-152039224 Neighboring gene long intergenic non-protein coding RNA 1470 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83100 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83142 Neighboring gene uncharacterized LOC124901117 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83185 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:152147932-152148511 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:152191225-152192424 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83374 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83428 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83450 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:152415832-152416029 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:152455744-152456284 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83469 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_83487 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:152685418-152686617 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:152729354-152730121 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:152731661-152732860 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:152730122-152730888 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:152829283-152830143 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:152835859-152836432 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16531 Neighboring gene glutamate ionotropic receptor AMPA type subunit 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:153162167-153162715 Neighboring gene NANOG hESC enhancer GRCh37_chr5:153170808-153171397 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16532 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:153204359-153204899 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:153320112-153321311 Neighboring gene long intergenic non-protein coding RNA 1861 Neighboring gene uncharacterized LOC107986464 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:153338304-153338911 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:153338912-153339518 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:153339519-153340125

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045476.1 

    Range
    101..399
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    153755382..153755680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    154288591..154288889
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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