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RN7SKP229 RN7SK pseudogene 229 [ Homo sapiens (human) ]

Gene ID: 106480904, updated on 10-Oct-2023

Summary

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Official Symbol
RN7SKP229provided by HGNC
Official Full Name
RN7SK pseudogene 229provided by HGNC
Primary source
HGNC:HGNC:45953
See related
AllianceGenome:HGNC:45953
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RN7SKP229 in Genome Data Viewer
Location:
1q25.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (181839539..181839774, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (181194953..181195188, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (181808674..181808909, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel subunit alpha1 E Neighboring gene uncharacterized LOC107985232 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2187 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2188 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1611 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181450844-181451376 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2189 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1612 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1613 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181452360-181452884 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:181452885-181453408 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2191 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2192 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2193 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1614 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2194 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:181598156-181598432 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:181737037-181738236 Neighboring gene RNA, 5S ribosomal pseudogene 70 Neighboring gene Sharpr-MPRA regulatory region 5358 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:181889418-181889626 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:181960367-181960534 Neighboring gene uncharacterized LOC105371640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1615 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:182025348-182025878 Neighboring gene zinc finger protein 648

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 7SK small nuclear pseudogene 229

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042967.1 

    Range
    101..336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    181839539..181839774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    181194953..181195188 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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