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SDCBP2P1 syndecan binding protein 2 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 106480801, updated on 10-Oct-2023

Summary

Official Symbol
SDCBP2P1provided by HGNC
Official Full Name
syndecan binding protein 2 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:44685
See related
Ensembl:ENSG00000223389 AllianceGenome:HGNC:44685
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

Location:
6q13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (73322837..73323450)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (74499482..74500095)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (74032560..74033173)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene KHDC1-KHDC1L Neighboring gene KH domain containing 1 Neighboring gene KHDC1 antisense RNA 1 Neighboring gene chromosome 6 open reading frame 147 Neighboring gene ribosomal protein SA pseudogene 41 Neighboring gene EIF3E pseudogene 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:74017111-74017738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24741 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24742 Neighboring gene phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 3 Neighboring gene MPRA-validated peak5896 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:74057704-74058208 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:74058209-74058712 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:74058713-74059217 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:74059218-74059721 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:74063051-74063552 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:74063553-74064052 Neighboring gene developmental pluripotency associated 5

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044176.1 

    Range
    101..714
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    73322837..73323450
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    74499482..74500095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)