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RNU1-138P RNA, U1 small nuclear 138, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480195, updated on 10-Oct-2023

Summary

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Official Symbol
RNU1-138Pprovided by HGNC
Official Full Name
RNA, U1 small nuclear 138, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48480
See related
Ensembl:ENSG00000206820 AllianceGenome:HGNC:48480
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU1-138P in Genome Data Viewer
Location:
4q26
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (113420323..113420486)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (116729062..116729225)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (114341479..114341642)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene ankyrin 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:114158073-114158257 Neighboring gene ribosomal protein S26 pseudogene 25 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:114199559-114199733 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72140 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:114213551-114214070 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:114214071-114214590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21836 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:114274931-114276130 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:114276560-114277759 Neighboring gene NANOG hESC enhancer GRCh37_chr4:114306634-114307363 Neighboring gene uncharacterized LOC105377374 Neighboring gene Sharpr-MPRA regulatory region 2369 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:114373445-114373992 Neighboring gene RNA, 7SL, cytoplasmic 184, pseudogene Neighboring gene calcium/calmodulin dependent protein kinase II delta Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15644 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15645 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72235 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:114481688-114482887 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_72247 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15646 Neighboring gene Sharpr-MPRA regulatory region 13729 Neighboring gene Sharpr-MPRA regulatory region 15168 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:114566848-114567352 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21838 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15647 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:114683084-114683622 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:114683623-114684161 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15648 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21839 Neighboring gene uncharacterized LOC105377375

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043463.1 

    Range
    101..264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    113420323..113420486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    116729062..116729225
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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