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RNU6-1331P RNA, U6 small nuclear 1331, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480147, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-1331Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1331, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48294
See related
Ensembl:ENSG00000200528 AllianceGenome:HGNC:48294
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q11.23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (53914719..53914824)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (54292116..54292221)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (54827279..54827384)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27358 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:54640179-54641378 Neighboring gene ATPase H+ transporting V1 subunit H Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27359 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27360 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19193 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:54789287-54789787 Neighboring gene Sharpr-MPRA regulatory region 5984 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19194 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:54793331-54793962 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:54793963-54794594 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27362 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27363 Neighboring gene regulator of G protein signaling 20 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27365 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27364 Neighboring gene RPS27A pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27366 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:54856969-54858168 Neighboring gene ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) pseudogene Neighboring gene transcription elongation factor A1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19197 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:54934747-54935540 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:54935541-54936332 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:54942814-54943544 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:54943545-54944276 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:54958280-54958473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27370 Neighboring gene lysophospholipase 1 Neighboring gene CRIPTO pseudogene 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045298.1 

    Range
    101..206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    53914719..53914824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    54292116..54292221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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