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RNU6-1311P RNA, U6 small nuclear 1311, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480138, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-1311Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1311, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48274
See related
Ensembl:ENSG00000207459 AllianceGenome:HGNC:48274
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
5q31.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (134634844..134634945, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (135160462..135160563, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (133970534..133970635, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene jade family PHD finger 2 Neighboring gene U7 small nuclear RNA Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133916765-133917297 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133917298-133917829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23156 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133928109-133928702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23157 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23158 Neighboring gene secretion associated Ras related GTPase 1B Neighboring gene HNF4 motif-containing MPRA enhancer 267 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16366 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:133968413-133968969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23159 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:133984123-133984660 Neighboring gene U7 small nuclear RNA Neighboring gene SEC24 homolog A, COPII coat complex component Neighboring gene ReSE screen-validated silencer GRCh37_chr5:134026455-134026653 Neighboring gene RNA, U6 small nuclear 1164, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042982.1 

    Range
    101..202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    134634844..134634945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    135160462..135160563 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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