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RNU6-1109P RNA, U6 small nuclear 1109, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480054, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-1109Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1109, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48072
See related
Ensembl:ENSG00000212489 AllianceGenome:HGNC:48072
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-1109P in Genome Data Viewer
Location:
3q28
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (190165417..190165523, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (192981723..192981829, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (189883206..189883312, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene methylthioadenosine phosphorylase pseudogene 2 Neighboring gene prolyl 3-hydroxylase 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:189759008-189759690 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14998 Neighboring gene Sharpr-MPRA regulatory region 7173 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14999 Neighboring gene Sharpr-MPRA regulatory region 10063 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20983 Neighboring gene P3H2 antisense RNA 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:189879699-189880410 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:189894452-189894952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:189894953-189895453 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20984 Neighboring gene NMNAT1 pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20985 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:189949260-189950459 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15001 Neighboring gene claudin 16 Neighboring gene claudin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044343.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    190165417..190165523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    192981723..192981829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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