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RNU6-1054P RNA, U6 small nuclear 1054, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480029, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-1054Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1054, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48017
See related
Ensembl:ENSG00000223225 AllianceGenome:HGNC:48017
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q26
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (118606450..118606553)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (121911752..121911855)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (119527605..119527708)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900767 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:119437439-119437560 Neighboring gene centrosomal protein 170 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:119452493-119452992 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:119454234-119454734 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:119454735-119455235 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:119490834-119491031 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21847 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:119513527-119514434 Neighboring gene uncharacterized LOC729218 Neighboring gene septin 14 pseudogene 4 Neighboring gene capicua transcriptional repressor pseudogene 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045729.1 

    Range
    101..204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    118606450..118606553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    121911752..121911855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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