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RNU6-1040P RNA, U6 small nuclear 1040, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480023, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-1040Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1040, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48003
See related
Ensembl:ENSG00000206701 AllianceGenome:HGNC:48003
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
8q21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (84665759..84665865, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (85103614..85103720, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (85577994..85578100, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:84932099-84932600 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:84932601-84933100 Neighboring gene tropomyosin alpha-3 chain-like Neighboring gene tropomyosin 3 pseudogene 3 Neighboring gene RALY RNA binding protein like Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:85202593-85203155 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:85336945-85337514 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:85532990-85533510 Neighboring gene Sharpr-MPRA regulatory region 11463 Neighboring gene PSMC2 pseudogene 2 Neighboring gene glucosamine-phosphate N-acetyltransferase 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044099.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    84665759..84665865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    85103614..85103720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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