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RNU6-1004P RNA, U6 small nuclear 1004, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480009, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-1004Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 1004, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47967
See related
Ensembl:ENSG00000252393 AllianceGenome:HGNC:47967
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
12q24.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (121604902..121605012)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (121598099..121598209)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (122042807..122042917)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene lysine demethylase 2B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121886380-121886880 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121886881-121887381 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:121889913-121890727 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:121890728-121891541 Neighboring gene microRNA 7107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4974 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4973 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:121913999-121914826 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121925323-121925834 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr12:121928205-121928918 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:121937748-121938447 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:121938448-121939146 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121940397-121940896 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:121951587-121951880 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7169 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121953080-121953588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121953589-121954095 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121956373-121956946 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7171 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121967403-121967904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121971375-121972045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7172 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121973358-121974150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7175 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4975 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4976 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:121984877-121985582 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:121987013-121987514 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:122014140-122014717 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:122014718-122015296 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4977 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:122018218-122019153 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr12:122020089-122021024 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:122021025-122021958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:122028863-122029678 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:122029679-122030494 Neighboring gene KDM2B divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4980 Neighboring gene Sharpr-MPRA regulatory region 5022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:122062776-122063276 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7176 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:122070465-122071345 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:122076353-122076870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:122076871-122077388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:122088979-122089480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:122089481-122089980 Neighboring gene ORAI calcium release-activated calcium modulator 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr12:122101860-122102399 Neighboring gene uncharacterized LOC105370034 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:122109697-122110623 Neighboring gene MORN repeat containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043985.1 

    Range
    101..211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    121604902..121605012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654719.1 Reference GRCh38.p14 PATCHES

    Range
    10678..10788
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    121598099..121598209
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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