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RNU6-639P RNA, U6 small nuclear 639, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479849, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-639Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 639, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47602
See related
Ensembl:ENSG00000206801 AllianceGenome:HGNC:47602
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
20q13.12
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (43796437..43796543, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (45529651..45529757, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (42425077..42425183, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 2194 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17906 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:42306550-42307240 Neighboring gene MYB proto-oncogene like 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17907 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17908 Neighboring gene MPRA-validated peak4221 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17909 Neighboring gene uncharacterized LOC101927200 Neighboring gene gametocyte specific factor 1 like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:42374309-42375128 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12930 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17911 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:42394850-42395350 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:42395351-42395851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17913 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17914 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:42443361-42443974 Neighboring gene uncharacterized LOC105372625 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17915 Neighboring gene uncharacterized LOC124904907

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044753.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    43796437..43796543 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    45529651..45529757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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