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RNU6-522P RNA, U6 small nuclear 522, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479797, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-522Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 522, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47485
See related
Ensembl:ENSG00000201367 AllianceGenome:HGNC:47485
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-522P in Genome Data Viewer
Location:
6p22.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (15314920..15315026)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (15188126..15188232)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (15315151..15315257)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15244415-15244928 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16946 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16947 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24064 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24065 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16949 Neighboring gene nonconserved acetylation island sequence 83 enhancer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15251871-15252646 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24066 Neighboring gene JARID2 antisense RNA 1 Neighboring gene JARID2 divergent transcript Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:15264949-15265458 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24067 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15267598-15268156 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15268157-15268714 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:15268715-15269273 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:15269274-15269831 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15280804-15281784 Neighboring gene jumonji and AT-rich interaction domain containing 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24068 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15291865-15292366 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24071 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16950 Neighboring gene Sharpr-MPRA regulatory region 4383 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24074 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16951 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24075 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24076 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15337209-15337728 Neighboring gene RNA, U6 small nuclear 645, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15385480-15386240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24078 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24079 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15402869-15403369 Neighboring gene Sharpr-MPRA regulatory region 1760 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:15404593-15405283 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:15413673-15413840 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24081 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16952 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24082 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15444755-15445255 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15447999-15448499 Neighboring gene NANOG hESC enhancer GRCh37_chr6:15461204-15461861 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:15469722-15469904 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:15473668-15474867 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:15491921-15492422 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15507577-15508118 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15508119-15508660 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:15508661-15509202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15513022-15514000 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:15517558-15518058 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:15523265-15523451 Neighboring gene uncharacterized LOC105374947 Neighboring gene MPRA-validated peak5680 silencer Neighboring gene dystrobrevin binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045805.1 

    Range
    101..207
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    15314920..15315026
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    15188126..15188232
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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