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RNU6-143P RNA, U6 small nuclear 143, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479629, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6-143Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 143, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47106
See related
Ensembl:ENSG00000252751 AllianceGenome:HGNC:47106
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (124407691..124407783)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (127133398..127133490)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (124126538..124126630)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene kalirin RhoGEF kinase Neighboring gene uncharacterized LOC105374077 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20395 Neighboring gene MPRA-validated peak4803 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:123966684-123967883 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14652 Neighboring gene NANOG hESC enhancer GRCh37_chr3:123985286-123985809 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:123988121-123988891 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:124091505-124092033 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:124128425-124129624 Neighboring gene microRNA 6083 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:124157584-124158153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:124160859-124161358 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:124209527-124210726 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:124229048-124230247 Neighboring gene uncharacterized LOC105374076 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:124264307-124264476 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:124274537-124274728 Neighboring gene Sharpr-MPRA regulatory region 5497 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20396 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14653 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20397 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20400 Neighboring gene MEMO1 pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045280.1 

    Range
    101..193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    124407691..124407783
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    127133398..127133490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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