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RNU6ATAC12P RNA, U6atac small nuclear 12, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479548, updated on 10-Oct-2023

Summary

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Official Symbol
RNU6ATAC12Pprovided by HGNC
Official Full Name
RNA, U6atac small nuclear 12, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:46911
See related
Ensembl:ENSG00000252351 AllianceGenome:HGNC:46911
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
11q25
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (131385249..131385363)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (131421136..131421250)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (131255144..131255258)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5758 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131091329-131091830 Neighboring gene NANOG hESC enhancer GRCh37_chr11:131092980-131093481 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131105841-131106494 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:131115943-131116588 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:131122872-131123374 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:131123375-131123875 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:131124378-131124878 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:131126385-131126884 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:131130399-131130938 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:131130939-131131476 Neighboring gene uncharacterized LOC124902794 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:131211673-131212872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131243973-131244635 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131317907-131318407 Neighboring gene Sharpr-MPRA regulatory region 1894 Neighboring gene neurotrimin Neighboring gene uncharacterized LOC101929653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:131454209-131455006 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5759 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:131533266-131533822 Neighboring gene NTM antisense RNA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045825.1 

    Range
    101..215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    131385249..131385363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    131421136..131421250
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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