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RN7SKP115 RN7SK pseudogene 115 [ Homo sapiens (human) ]

Gene ID: 106479146, updated on 10-Oct-2023

Summary

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Official Symbol
RN7SKP115provided by HGNC
Official Full Name
RN7SK pseudogene 115provided by HGNC
Primary source
HGNC:HGNC:45839
See related
Ensembl:ENSG00000200047 AllianceGenome:HGNC:45839
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
11q22.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (100839630..100839946)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (100848808..100849124)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (100710361..100710677)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902736 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:100549285-100549786 Neighboring gene ARHGAP42 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 11910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5428 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:100569215-100569715 Neighboring gene Rho GTPase activating protein 42 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:100596358-100597237 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5429 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:100618800-100619666 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:100620727-100621926 Neighboring gene Sharpr-MPRA regulatory region 13184 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:100698323-100699048 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:100699049-100699774 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:100699775-100700498 Neighboring gene Sharpr-MPRA regulatory region 13718 Neighboring gene uncharacterized LOC105369457 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5430 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5431 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_18463 Neighboring gene Sharpr-MPRA regulatory region 5256 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5432 Neighboring gene small nucleolar RNA, C/D box 13I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 7SK small nuclear pseudogene 115

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_045375.1 

    Range
    101..417
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    100839630..100839946
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    100848808..100849124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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