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RN7SKP48 RN7SK pseudogene 48 [ Homo sapiens (human) ]

Gene ID: 106479116, updated on 10-Oct-2023

Summary

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Official Symbol
RN7SKP48provided by HGNC
Official Full Name
RN7SK pseudogene 48provided by HGNC
Primary source
HGNC:HGNC:45772
See related
Ensembl:ENSG00000201901 AllianceGenome:HGNC:45772
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
4q21.23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (85100496..85100821)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (88430512..88430837)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (86021649..86021974)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene WD repeat and FYVE domain containing 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:85848560-85849074 Neighboring gene RNA, U6 small nuclear 469, pseudogene Neighboring gene WDFY3 antisense RNA 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:86087809-86088309 Neighboring gene quinone oxidoreductase-like protein 2 pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:86241730-86242929 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:86322472-86323671 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21690 Neighboring gene Rho GTPase activating protein 24 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21691 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21693 Neighboring gene uncharacterized LOC105377319

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 7SK small nuclear pseudogene 48

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042996.1 

    Range
    101..426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    85100496..85100821
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    88430512..88430837
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases