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RN7SKP40 RN7SK pseudogene 40 [ Homo sapiens (human) ]

Gene ID: 106479113, updated on 10-Oct-2023

Summary

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Official Symbol
RN7SKP40provided by HGNC
Official Full Name
RN7SK pseudogene 40provided by HGNC
Primary source
HGNC:HGNC:45764
See related
Ensembl:ENSG00000253020 AllianceGenome:HGNC:45764
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
3q26.31
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (174631823..174632064)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (177419140..177419381)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (174349613..174349854)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:174130757-174131368 Neighboring gene uncharacterized LOC105374226 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:174156710-174157909 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:174158538-174159189 Neighboring gene ribosomal protein L8 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:174218495-174218996 Neighboring gene N-acetylated alpha-linked acidic dipeptidase like 2 Neighboring gene NANOG hESC enhancer GRCh37_chr3:174255942-174256889 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:174258235-174258749 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:174323251-174323751 Neighboring gene uncharacterized LOC107986027 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:174769760-174770554 Neighboring gene uncharacterized LOC124906305

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 7SK small nuclear pseudogene 40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042970.1 

    Range
    101..342
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    174631823..174632064
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    177419140..177419381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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