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HTR3E-AS1 HTR3E antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 106478970, updated on 10-Oct-2023

Summary

Official Symbol
HTR3E-AS1provided by HGNC
Official Full Name
HTR3E antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:41032
See related
Ensembl:ENSG00000238020 AllianceGenome:HGNC:41032
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See HTR3E-AS1 in Genome Data Viewer
Location:
3q27.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (184095118..184105178, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (186904681..186914734, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (183812906..183822966, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:183771390-183772589 Neighboring gene 5-hydroxytryptamine receptor 3C Neighboring gene MPRA-validated peak4963 silencer Neighboring gene 5-hydroxytryptamine receptor 3C2, pseudogene Neighboring gene MPRA-validated peak4964 silencer Neighboring gene 5-hydroxytryptamine receptor 3E Neighboring gene heat shock protein 90 alpha family class A member 5, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:183851535-183852176 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20901 Neighboring gene EIF2B5 divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133658.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    DA742775
    Related
    ENST00000431427.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    184095118..184105178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    186904681..186914734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)