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TRPC7-AS2 TRPC7 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 106478968, updated on 10-Oct-2023

Summary

Official Symbol
TRPC7-AS2provided by HGNC
Official Full Name
TRPC7 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:40937
See related
Ensembl:ENSG00000250947 AllianceGenome:HGNC:40937
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTB-28J9.2
Expression
Low expression observed in reference dataset See more
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Genomic context

Location:
5q31.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (136226655..136316100)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (136749185..136838605)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (135562343..135651788)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:135527733-135528647 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:135528804-135529321 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:135537973-135538930 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:135538931-135539888 Neighboring gene small integral membrane protein 32 Neighboring gene TRPC7 antisense RNA 1 Neighboring gene transient receptor potential cation channel subfamily C member 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:135586892-135587392 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23180 Neighboring gene uncharacterized LOC124901075 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:135717435-135718266 Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 18 Neighboring gene heterogeneous nuclear ribonucleoprotein A1 pseudogene 13

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_133682.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008661, BI765200
    Related
    ENST00000513958.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    136226655..136316100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    136749185..136838605
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)