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RNU6-18P RNA, U6 small nuclear 18, pseudogene [ Homo sapiens (human) ]

Gene ID: 106478916, updated on 8-Nov-2023

Summary

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Official Symbol
RNU6-18Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 18, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:34262
See related
Ensembl:ENSG00000207257 AllianceGenome:HGNC:34262
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNU6-18
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Genomic context

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See RNU6-18P in Genome Data Viewer
Location:
15q13.3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (32284152..32284257)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (30078867..30078972)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (32576353..32576458)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA18 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:32267901-32268583 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32269149-32269715 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32269716-32270281 Neighboring gene uncharacterized LOC124903441 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32322777-32323342 Neighboring gene cholinergic receptor nicotinic alpha 7 subunit Neighboring gene MPRA-validated peak2289 silencer Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:32444189-32444690 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:32444691-32445190 Neighboring gene uncharacterized LOC102724078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32475571-32476072 Neighboring gene NANOG hESC enhancer GRCh37_chr15:32557858-32558397 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32568842-32569342 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32584971-32585470 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32644691-32645237 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:32645238-32645783 Neighboring gene uncharacterized LOC105376709

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043466.1 

    Range
    101..206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    32284152..32284257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    4457407..4457512
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_012132920.1 Reference GRCh38.p14 PATCHES

    Range
    243379..243484 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    4569859..4569964
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    30078867..30078972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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