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Lincmd1 long intergenic non-protein coding RNA of muscle differentiation 1 [ Mus musculus (house mouse) ]

Gene ID: 105661730, updated on 13-Mar-2024

Summary

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Official Symbol
Lincmd1provided by MGI
Official Full Name
long intergenic non-protein coding RNA of muscle differentiation 1provided by MGI
Primary source
MGI:MGI:5818206
See related
Ensembl:ENSMUSG00000099906 AllianceGenome:MGI:5818206
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm28653; Linc-md1
Expression
Biased expression in limb E14.5 (RPKM 6.3), CNS E14 (RPKM 0.8) and 3 other tissues See more
Orthologs
human all
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Genomic context

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Location:
1 A4; 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (20740106..20753182)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (20669882..20682958)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene polycystic kidney and hepatic disease 1 Neighboring gene 60S ribosomal protein L17 pseudogene Neighboring gene predicted gene, 24162 Neighboring gene STARR-seq mESC enhancer starr_00387 Neighboring gene microRNA 133b Neighboring gene microRNA 206 Neighboring gene STARR-seq mESC enhancer starr_00390 Neighboring gene interleukin 17A Neighboring gene interleukin 17F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA. Cesana M, et al. Cell, 2011 Oct 14. PMID 22000014, Free PMC Article
  2. lncRNAdb: a reference database for long noncoding RNAs. Amaral PP, et al. Nucleic Acids Res, 2011 Jan. PMID 21112873, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Other Names

  • long intergenic non-coding RNA muscle differentiation 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131249.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    JN699052
    Related
    ENSMUST00000227082.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    20740106..20753182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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