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LINC01047 long intergenic non-protein coding RNA 1047 [ Homo sapiens (human) ]

Gene ID: 105616982, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01047provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1047provided by HGNC
Primary source
HGNC:HGNC:49041
See related
Ensembl:ENSG00000232225 AllianceGenome:HGNC:49041
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
13q31.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (89214847..89236890, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (88418915..88440954, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (89867101..89889144, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene GRPEL2 pseudogene 1 Neighboring gene uncharacterized LOC105370307 Neighboring gene NANOG hESC enhancer GRCh37_chr13:89895215-89895716 Neighboring gene long intergenic non-protein coding RNA 440 Neighboring gene tripartite motif containing 60 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:89976834-89977393 Neighboring gene Sp3 transcription factor pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131229.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353635, AL354997, BG183515, BG189865, BG191871, BG205744, BG218498
    Related
    ENST00000415193.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    89214847..89236890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    88418915..88440954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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