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LOC105379391 uncharacterized LOC105379391 [ Homo sapiens (human) ]

Gene ID: 105379391, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105379391
Gene description
uncharacterized LOC105379391
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8p11.21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (41435462..41440419)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (41709062..41714187)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene secreted frizzled related protein 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr8:41165170-41165941 Neighboring gene RNA, U6 small nuclear 895, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:41165942-41166712 Neighboring gene NANOG hESC enhancer GRCh37_chr8:41168632-41169159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:41179229-41179970 Neighboring gene Sharpr-MPRA regulatory region 9460 Neighboring gene uncharacterized LOC124901938 Neighboring gene small nucleolar RNA, C/D box 65B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19142 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27282 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27284 Neighboring gene golgin A7 Neighboring gene keratin 18 pseudogene 37

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    41435462..41440419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_949705.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    41709062..41714187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078928.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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