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LINC02948 long intergenic non-protein coding RNA 2948 [ Homo sapiens (human) ]

Gene ID: 105379351, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02948provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2948provided by HGNC
Primary source
HGNC:HGNC:55963
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02948 in Genome Data Viewer
Location:
8p12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (29562273..29565269)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (29840620..29843615)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986883 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:29379807-29380308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27198 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27199 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27200 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:29386565-29387764 Neighboring gene uncharacterized LOC107986935 Neighboring gene uncharacterized LOC105379350 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:29412676-29413875 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27202 Neighboring gene NANOG hESC enhancer GRCh37_chr8:29430452-29430971 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:29442523-29443222 Neighboring gene uncharacterized LOC124901925 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:29449049-29450248 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19073 Neighboring gene uncharacterized LOC105379352

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    29562273..29565269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745861.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    29840620..29843615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078844.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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