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LOC105379301 uncharacterized LOC105379301 [ Homo sapiens (human) ]

Gene ID: 105379301, updated on 25-Oct-2023

Summary

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Gene symbol
LOC105379301
Gene description
uncharacterized LOC105379301
See related
Ensembl:ENSG00000254242
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 1.2) See more
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Genomic context

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See LOC105379301 in Genome Data Viewer
Location:
8p22
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (19091739..19145393)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (19356556..19410110)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene pleckstrin and Sec7 domain containing 3 Neighboring gene uncharacterized LOC105379303 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:18859165-18859442 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18967 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18968 Neighboring gene uncharacterized LOC124901898 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:18941277-18942070 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:18942071-18942864 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:19034764-19035693 Neighboring gene uncharacterized LOC100128993 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr8:19051482-19052681 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:19068899-19069055 Neighboring gene uncharacterized LOC105379300 Neighboring gene ATPase plasma membrane Ca2+ transporting 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_188132.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC100849

  2. NR_188133.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC100849
    Related
    ENST00000660401.1

  3. NR_188134.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC100849

  4. NR_188135.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC100849

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    19091739..19145393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    19356556..19410110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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