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MSRA-DT MSRA divergent transcript [ Homo sapiens (human) ]

Gene ID: 105379234, updated on 10-Oct-2023

Summary

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Official Symbol
MSRA-DTprovided by HGNC
Official Full Name
MSRA divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55400
See related
AllianceGenome:HGNC:55400
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
8p23.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (10037830..10053062, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (9687588..9702796)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC105379235 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18909 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18910 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:9912619-9913205 Neighboring gene uncharacterized LOC124901885 Neighboring gene methionine sulfoxide reductase A Neighboring gene uncharacterized LOC124901886

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    10037830..10053062 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_002956686.1 RNA Sequence

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    3295348..3310556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001745802.2 RNA Sequence

  2. XR_948944.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    9687588..9702796
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007078695.1 RNA Sequence

  2. XR_007078696.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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