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PDZPH1P PDZ and pleckstrin homology domains 1, pseudogene [ Homo sapiens (human) ]

Gene ID: 105379197, updated on 13-Mar-2024

Summary

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Official Symbol
PDZPH1Pprovided by HGNC
Official Full Name
PDZ and pleckstrin homology domains 1, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:51488
See related
Ensembl:ENSG00000226926 AllianceGenome:HGNC:51488
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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Location:
5q21.2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (103430533..103526618, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (103938714..104034792, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (102766234..102862319, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901037 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16210 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16211 Neighboring gene macrophage immunometabolism regulator Neighboring gene ReSE screen-validated silencer GRCh37_chr5:102778681-102778899 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22861 Neighboring gene long intergenic non-protein coding RNA 2115 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:102897730-102898262 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:102898263-102898793 Neighboring gene nudix hydrolase 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Homology

Other Names

  • pleckstrin homology domain-containing family A member 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046694.1 

    Range
    101..96186
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    103430533..103526618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    103938714..104034792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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