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DMXL1-DT DMXL1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105379143, updated on 10-Oct-2023

Summary

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Official Symbol
DMXL1-DTprovided by HGNC
Official Full Name
DMXL1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55568
See related
AllianceGenome:HGNC:55568
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q23.1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (118996312..119070890, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (119509377..119583875, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (118332007..118406585, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901052 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:118134858-118136057 Neighboring gene NANOG hESC enhancer GRCh37_chr5:118158043-118158570 Neighboring gene DTW domain containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118282316-118282836 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118282837-118283356 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:118285193-118285694 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:118286400-118287290 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16260 Neighboring gene microRNA 1244-2 Neighboring gene N-acetylneuraminic acid phosphatase pseudogene Neighboring gene prothymosin alpha pseudogene 2 Neighboring gene CATSPER2 pseudogene 2 Neighboring gene RNA, U6 small nuclear 373, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22957 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:118374017-118374522 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:118385414-118385914 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22958 Neighboring gene small nucleolar RNA U13 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16261 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16262 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22959 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16263 Neighboring gene Dmx like 1 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:118456778-118457628 Neighboring gene septin 7 pseudogene 10 Neighboring gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134249.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC008629, BC036311

  2. NR_134250.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs at both the 5' and 3' ends and is shorter than variant 1.
    Source sequence(s)
    DB288884

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    118996312..119070890 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    119509377..119583875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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