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LOC105379100 uncharacterized LOC105379100 [ Homo sapiens (human) ]

Gene ID: 105379100, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105379100
Gene description
uncharacterized LOC105379100
See related
Ensembl:ENSG00000249787
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q21.1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (100398497..100443723)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (100907135..100952039)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379101 Neighboring gene GUSB pseudogene 19 Neighboring gene FAM174A divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22841 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22842 Neighboring gene family with sequence similarity 174 member A Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22843

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    100398497..100443723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058884.1 RNA Sequence

  2. XR_007058886.1 RNA Sequence

  3. XR_948626.3 RNA Sequence

  4. XR_007058889.1 RNA Sequence

  5. XR_007058887.1 RNA Sequence

  6. XR_948624.3 RNA Sequence

  7. XR_007058888.1 RNA Sequence

  8. XR_948625.3 RNA Sequence

  9. XR_001742824.2 RNA Sequence

    Related
    ENST00000657549.1

  10. XR_007058885.1 RNA Sequence

  11. XR_948622.3 RNA Sequence

  12. XR_948623.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    100907135..100952039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075832.1 RNA Sequence

  2. XR_007075835.1 RNA Sequence

  3. XR_007075833.1 RNA Sequence

  4. XR_007075838.1 RNA Sequence

  5. XR_007075840.1 RNA Sequence

  6. XR_007075837.1 RNA Sequence

  7. XR_007075839.1 RNA Sequence

  8. XR_007075830.1 RNA Sequence

  9. XR_007075831.1 RNA Sequence

  10. XR_007075836.1 RNA Sequence

  11. XR_007075834.1 RNA Sequence

Nucleotide Protein
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