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LOC105379040 uncharacterized LOC105379040 [ Homo sapiens (human) ]

Gene ID: 105379040, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105379040
Gene description
uncharacterized LOC105379040
See related
Ensembl:ENSG00000289535
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q13.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (74948167..74975758)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (75429022..75456607)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 28 pseudogene Neighboring gene ribosomal protein L39 pseudogene 21 Neighboring gene Sharpr-MPRA regulatory region 2499 Neighboring gene NANOG hESC enhancer GRCh37_chr5:74269438-74269939 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22677 Neighboring gene ribosomal protein L27a pseudogene 5 Neighboring gene NANOG hESC enhancer GRCh37_chr5:74302578-74303200 Neighboring gene glucosaminyl (N-acetyl) transferase 4 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:74332401-74333600 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16098 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16099 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    74948167..74975758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_948485.3 RNA Sequence

    Related
    ENST00000686948.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    75429022..75456607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075712.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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