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LINC02105 long intergenic non-protein coding RNA 2105 [ Homo sapiens (human) ]

Gene ID: 105378966, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02105provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2105provided by HGNC
Primary source
HGNC:HGNC:52960
See related
Ensembl:ENSG00000250447 AllianceGenome:HGNC:52960
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.1) See more
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Genomic context

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Location:
5q11.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (53776050..53819682, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (54603848..54647481, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (53071880..53115512, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22547 Neighboring gene NADH:ubiquinone oxidoreductase subunit S4 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:52966977-52967961 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:53007961-53008462 Neighboring gene uncharacterized LOC124900975 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16007 Neighboring gene MPRA-validated peak5241 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:53149739-53150938 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:53157616-53157824 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:53178032-53179231 Neighboring gene argininosuccinate synthetase 1 pseudogene 9 Neighboring gene RNA, U6 small nuclear 272, pseudogene Neighboring gene ADP ribosylation factor like GTPase 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147167.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025175, BX341044, CD358361
    Related
    ENST00000673597.1

  2. NR_147168.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025175, BX341044
    Related
    ENST00000504552.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    53776050..53819682 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    54603848..54647481 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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