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LINC01765 long intergenic non-protein coding RNA 1765 [ Homo sapiens (human) ]

Gene ID: 105378916, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01765provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1765provided by HGNC
Primary source
HGNC:HGNC:52555
See related
Ensembl:ENSG00000233730 AllianceGenome:HGNC:52555
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p13.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (115099647..115102681)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (115109766..115114135)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 5363 Neighboring gene NANOG hESC enhancer GRCh37_chr1:115589292-115589828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:115604953-115605476 Neighboring gene thyroid stimulating hormone subunit beta Neighboring gene uncharacterized LOC124904359 Neighboring gene tetraspanin 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1554 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:115690783-115691409 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:115721881-115723080 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:115800386-115801585 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:115842590-115843789 Neighboring gene NGF antisense RNA 1 Neighboring gene nerve growth factor Neighboring gene uncharacterized LOC112268234

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    115099647..115102681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_947722.3 RNA Sequence

    Related
    ENST00000448680.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    115109766..115114135
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070549.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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