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LINC02884 long intergenic non-protein coding RNA 2884 [ Homo sapiens (human) ]

Gene ID: 105378909, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02884provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2884provided by HGNC
Primary source
HGNC:HGNC:54808
See related
Ensembl:ENSG00000231246 AllianceGenome:HGNC:54808
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 3.3), prostate (RPKM 0.7) and 13 other tissues See more
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Genomic context

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See LINC02884 in Genome Data Viewer
Location:
1p13.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (112229673..112360607, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (112244570..112372886, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904319 Neighboring gene uncharacterized LOC124904845 Neighboring gene MPRA-validated peak367 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:112793897-112795096 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1511 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:112861864-112863063 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:112868351-112868850 Neighboring gene small nucleolar RNA U13 Neighboring gene thioredoxin pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Recounting the FANTOM CAGE-Associated Transcriptome. Imada EL, et al. Genome Res, 2020 Jul. PMID 32079618, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183465.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL445426, AL591521
    Related
    ENST00000659549.1

  2. NR_183466.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL445426, AL591521

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    112229673..112360607 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    112244570..112372886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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