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LINC02787 long intergenic non-protein coding RNA 2787 [ Homo sapiens (human) ]

Gene ID: 105378852, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02787provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2787provided by HGNC
Primary source
HGNC:HGNC:54308
See related
AllianceGenome:HGNC:54308
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02787 in Genome Data Viewer
Location:
1p22.2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (90511987..90547930, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (90356381..90392313, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378850 Neighboring gene MPRA-validated peak313 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:90876847-90878046 Neighboring gene uncharacterized LOC105378851 Neighboring gene NANOG hESC enhancer GRCh37_chr1:90967710-90968211 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:91027459-91027961 Neighboring gene small nucleolar RNA, C/D box 3G Neighboring gene NANOG hESC enhancer GRCh37_chr1:91149838-91150358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:91171602-91172396 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:91176541-91177109 Neighboring gene BarH like homeobox 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    90511987..90547930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737796.1 RNA Sequence

  2. XR_947593.1 RNA Sequence

  3. XR_947592.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    90356381..90392313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070444.1 RNA Sequence

  2. XR_007070443.1 RNA Sequence

  3. XR_007070442.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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