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LINC01707 long intergenic non-protein coding RNA 1707 [ Homo sapiens (human) ]

Gene ID: 105378785, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01707provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1707provided by HGNC
Primary source
HGNC:HGNC:52495
See related
Ensembl:ENSG00000223883 AllianceGenome:HGNC:52495
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p31.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (69055898..69185003)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (68933435..69062535)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (69521581..69650686)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984967 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:69204935-69205498 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:69205499-69206062 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:69273286-69273387 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:69347197-69347832 Neighboring gene uncharacterized LOC105378783 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:69520590-69521789 Neighboring gene uncharacterized LOC105378787 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:69709807-69710471 Neighboring gene long intergenic non-protein coding RNA 2791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:69777582-69778086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:69778087-69778590 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:69875655-69876154 Neighboring gene long intergenic non-protein coding RNA 1758

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146608.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX117229
    Related
    ENST00000425517.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    69055898..69185003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    68933435..69062535
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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