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EPS15-AS1 EPS15 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 105378720, updated on 10-Oct-2023

Summary

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Official Symbol
EPS15-AS1provided by HGNC
Official Full Name
EPS15 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40219
See related
Ensembl:ENSG00000227070 AllianceGenome:HGNC:40219
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See EPS15-AS1 in Genome Data Viewer
Location:
1p32.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (51518272..51579310)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (51398184..51459226)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene proteasome 26S subunit, non-ATPase 7 pseudogene Neighboring gene epidermal growth factor receptor pathway substrate 15 Neighboring gene RNA, U6 small nuclear 877, pseudogene Neighboring gene MPRA-validated peak220 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1023 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1024 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:51984193-51985121 Neighboring gene RNA, U6 small nuclear 1281, pseudogene Neighboring gene oxysterol binding protein like 9 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1025 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1026 Neighboring gene calreticulin 4, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr1:52073806-52073988 Neighboring gene uncharacterized LOC105378719 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:52082461-52083369 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:52083370-52084277 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:52087823-52089022 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:52113492-52113700 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 51

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Potential readthrough

Included gene: OSBPL9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183651.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104170, AL772260

  2. NR_183652.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104170, AL772260
    Related
    ENST00000702775.1

  3. NR_183653.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC104170, AL772260

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    51518272..51579310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    51398184..51459226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases