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LINC02786 long intergenic non-protein coding RNA 2786 [ Homo sapiens (human) ]

Gene ID: 105378655, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02786provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2786provided by HGNC
Primary source
HGNC:HGNC:54307
See related
AllianceGenome:HGNC:54307
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
1p34.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (38129915..38141575, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (37997111..38008781, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38512768-38513268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38513269-38513769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 687 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 787 Neighboring gene MIR3659 host gene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38537009-38537508 Neighboring gene POU class 3 homeobox 1 Neighboring gene VISTA enhancer hs238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38579645-38580510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38581621-38582121 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38582797-38583340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38583341-38583883 Neighboring gene microRNA 3659 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38590116-38590297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38594298-38594798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38605789-38606702 Neighboring gene uncharacterized LOC105378654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 789 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 791 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 792 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38671184-38671684 Neighboring gene long intergenic non-protein coding RNA 1343 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38704546-38705076 Neighboring gene VISTA enhancer hs1001 Neighboring gene VISTA enhancer hs2088 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38736051-38736648 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38736899-38737076 Neighboring gene uncharacterized LOC105378657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38827443-38827961 Neighboring gene VISTA enhancer hs1546 Neighboring gene tubulin beta 6 class V pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    38129915..38141575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737991.3 RNA Sequence

  2. XR_007065917.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    37997111..38008781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070090.1 RNA Sequence

  2. XR_007070091.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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