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LINC02651 long intergenic non-protein coding RNA 2651 [ Homo sapiens (human) ]

Gene ID: 105378346, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02651provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2651provided by HGNC
Primary source
HGNC:HGNC:54136
See related
AllianceGenome:HGNC:54136
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02651 in Genome Data Viewer
Location:
10q22.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (69684449..69691179)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (70552494..70559241)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene MT-ND1 pseudogene 20 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71390546-71391431 Neighboring gene family with sequence similarity 241 member B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71412271-71412952 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71415742-71416520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71416521-71417298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71422303-71423252 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17069 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71445612-71446112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71469507-71470006 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71488132-71488934 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71491927-71492581 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71498859-71499463 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71516819-71517320 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71527262-71528026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71528027-71528790 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71528791-71529554 Neighboring gene ribosomal protein L5 pseudogene 26 Neighboring gene uncharacterized LOC124902444

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    69684449..69691179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946038.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    70552494..70559241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081488.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases