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ANK3-DT ANK3 divergent transcript [ Homo sapiens (human) ]

Gene ID: 105378320, updated on 10-Oct-2023

Summary

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Official Symbol
ANK3-DTprovided by HGNC
Official Full Name
ANK3 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:54102
See related
AllianceGenome:HGNC:54102
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
10q21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (60733553..60741836)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (61590283..61598566)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene ankyrin 3 Neighboring gene uncharacterized LOC124902430 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2389 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:62495900-62496400 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:62496401-62496901 Neighboring gene ADP ribosylation factor like GTPase 4A pseudogene 1 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:62629619-62630120 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:62630121-62630620 Neighboring gene cyclin dependent kinase 1 Neighboring gene uncharacterized LOC124902432 Neighboring gene Rho related BTB domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184155.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC022390

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    60733553..60741836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    61590283..61598566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases