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LINC02672 long intergenic non-protein coding RNA 2672 [ Homo sapiens (human) ]

Gene ID: 105378309, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02672provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2672provided by HGNC
Primary source
HGNC:HGNC:54159
See related
AllianceGenome:HGNC:54159
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in thyroid (RPKM 4.5) and kidney (RPKM 1.0) See more
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Genomic context

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See LINC02672 in Genome Data Viewer
Location:
10q21.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (52972264..53030110, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (53821257..53879125, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378306 Neighboring gene uncharacterized LOC105378307 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:54624105-54624866 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:54643985-54644699 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3377 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3378 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:54663149-54663915 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:54683191-54683917 Neighboring gene uncharacterized LOC105378308 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:54724279-54724804 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:54725855-54726379 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:54727777-54728312 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:54789467-54789966 Neighboring gene SNRPE pseudogene 8 Neighboring gene uncharacterized LOC105378310

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186376.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073174

  2. NR_186377.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073174

  3. NR_186378.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073174

  4. NR_186379.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073174

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    52972264..53030110 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    53821257..53879125 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases