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LOC105378102 uncharacterized LOC105378102 [ Homo sapiens (human) ]

Gene ID: 105378102, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378102
Gene description
uncharacterized LOC105378102
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6q26
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (163903500..164058966)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (165268279..165423788)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164171433-164172035 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:164202059-164202593 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25425 Neighboring gene RNA, 7SL, cytoplasmic 366, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164286848-164287348 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:164361763-164362454 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:164364039-164364692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164365590-164366091 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164366092-164366592 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164372861-164373361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164381233-164382004 Neighboring gene VISTA enhancer hs1955 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:164489884-164491083 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:164500883-164501384 Neighboring gene uncharacterized LOC105378106 Neighboring gene Sharpr-MPRA regulatory region 12678 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:164648817-164650016 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:164664227-164665426 Neighboring gene uncharacterized LOC105378109

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    163903500..164058966
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943213.4 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    165268279..165423788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077478.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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