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LOC105378052 uncharacterized LOC105378052 [ Homo sapiens (human) ]

Gene ID: 105378052, updated on 16-Jan-2024

Summary

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Gene symbol
LOC105378052
Gene description
uncharacterized LOC105378052
See related
Ensembl:ENSG00000293239
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.9) See more
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Genomic context

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See LOC105378052 in Genome Data Viewer
Location:
6q25.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (149934513..149936319)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (151133855..151135661)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (150255649..150257455)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene RAET1E antisense RNA 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:150238439-150238724 Neighboring gene retinoic acid early transcript 1F (pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150246453-150246988 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150246989-150247523 Neighboring gene retinoic acid early transcript 1G Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:150259106-150259796 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:150259797-150260487 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17672 Neighboring gene UL16 binding protein 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150274681-150275653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150275654-150276625 Neighboring gene Sharpr-MPRA regulatory region 14768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150285415-150285954 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:150286496-150287035 Neighboring gene UL16 binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_134598.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC040898, HY006365
    Related
    ENST00000421363.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    149934513..149936319
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    151133855..151135661
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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