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LOC105378044 uncharacterized LOC105378044 [ Homo sapiens (human) ]

Gene ID: 105378044, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105378044
Gene description
uncharacterized LOC105378044
See related
Ensembl:ENSG00000226249
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.3) See more
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Genomic context

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Location:
6q24.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (147741434..147743297, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (148934749..148936612, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901421 Neighboring gene uncharacterized LOC105378043 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:147759841-147760442 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:147760443-147761044 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:147769071-147769837 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:147824689-147825218 Neighboring gene YAP1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17650 Neighboring gene MPRA-validated peak6202 silencer Neighboring gene sterile alpha motif domain containing 5 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90808 Neighboring gene MPRA-validated peak6203 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:148037044-148037544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:148225800-148226300 Neighboring gene uncharacterized LOC124901423 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:148467567-148468766 Neighboring gene NANOG hESC enhancer GRCh37_chr6:148495187-148495773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:148573377-148573878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:148573879-148574378 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:148585683-148586236 Neighboring gene SAM and SH3 domain containing 1 Neighboring gene RNA, U6 small nuclear 1222, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    147741434..147743297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_943098.3 RNA Sequence

    Related
    ENST00000448909.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    148934749..148936612 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007077211.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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