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LINC01942 long intergenic non-protein coding RNA 1942 [ Homo sapiens (human) ]

Gene ID: 105377736, updated on 10-Oct-2023

Summary

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Official Symbol
LINC01942provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1942provided by HGNC
Primary source
HGNC:HGNC:52766
See related
Ensembl:ENSG00000253428 AllianceGenome:HGNC:52766
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01942 in Genome Data Viewer
Location:
5q35.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (173689459..173705849)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (174229577..174245976)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (173116462..173132852)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16639 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16640 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23655 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23656 Neighboring gene biorientation of chromosomes in cell division 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:173055264-173056085 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:173059934-173061133 Neighboring gene long intergenic non-protein coding RNA 1863 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:173097006-173097602 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173134228-173134728 Neighboring gene uncharacterized LOC107984118 Neighboring gene long intergenic non-protein coding RNA 1484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173147588-173148088 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173148089-173148589 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23660 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16641 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23662 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23663 Neighboring gene uncharacterized LOC124901138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:173198292-173199282

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Other Names

  • CTB-43E15.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_146727.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC008674, DA422218
    Related
    ENST00000521373.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    173689459..173705849
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    174229577..174245976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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