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LOC105377724 uncharacterized LOC105377724 [ Homo sapiens (human) ]

Gene ID: 105377724, updated on 10-Oct-2023

Summary

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Gene symbol
LOC105377724
Gene description
uncharacterized LOC105377724
See related
Ensembl:ENSG00000285914
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
5q35.1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (171718733..171742480, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (172259077..172282816, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377722 Neighboring gene uncharacterized LOC107986392 Neighboring gene uncharacterized LOC124901134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171042917-171043902 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171045888-171046390 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:171050255-171051075 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171071283-171071784 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171071785-171072284 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:171094673-171095251 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:171095252-171095829 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:171106695-171107194 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:171125821-171126321 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:171125320-171125820 Neighboring gene uncharacterized LOC105377723 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23613 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23614 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:171177581-171178080 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:171207801-171209000 Neighboring gene uncharacterized LOC105377725 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:171221789-171222988 Neighboring gene small integral membrane protein 23 Neighboring gene Sharpr-MPRA regulatory region 9260

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    171718733..171742480 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742983.2 RNA Sequence

  2. XR_001742980.2 RNA Sequence

  3. XR_941218.3 RNA Sequence

  4. XR_001742984.2 RNA Sequence

    Related
    ENST00000650062.1

  5. XR_001742982.2 RNA Sequence

  6. XR_001742981.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    172259077..172282816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076116.1 RNA Sequence

  2. XR_007076112.1 RNA Sequence

  3. XR_007076114.1 RNA Sequence

  4. XR_007076117.1 RNA Sequence

  5. XR_007076115.1 RNA Sequence

  6. XR_007076113.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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