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LINC02283 long intergenic non-protein coding RNA 2283 [ Homo sapiens (human) ]

Gene ID: 105377656, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02283provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2283provided by HGNC
Primary source
HGNC:HGNC:53200
See related
AllianceGenome:HGNC:53200
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward brain (RPKM 1.2) See more
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Genomic context

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Location:
4q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (54332892..54356104)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (57821644..57844890)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (55199059..55222271)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55091451-55092278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55092279-55093104 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55093933-55094758 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:55099490-55100040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21572 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55100592-55100699 Neighboring gene ribosomal protein L22 pseudogene 13 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55122608-55122834 Neighboring gene platelet derived growth factor receptor alpha Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:55144323-55144846 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:55147260-55148459 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55161059-55161251 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:55190909-55191566 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:55191567-55192224 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55405507-55406008 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1578 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1581 Neighboring gene long intergenic non-protein coding RNA 2260 Neighboring gene Sharpr-MPRA regulatory region 7950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21573 Neighboring gene KIT proto-oncogene, receptor tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147160.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC098587, BX114935, CA433628

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    54332892..54356104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    57821644..57844890
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases