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LINC02174 long intergenic non-protein coding RNA 2174 [ Homo sapiens (human) ]

Gene ID: 105377536, updated on 10-Oct-2023

Summary

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Official Symbol
LINC02174provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2174provided by HGNC
Primary source
HGNC:HGNC:53037
See related
Ensembl:ENSG00000249297 AllianceGenome:HGNC:53037
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
4q34.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (171602683..171638763, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (174954980..174991042, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (172523834..172559914, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2504 Neighboring gene uncharacterized LOC105377535 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15800 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15801 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22151 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15802 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22152 Neighboring gene uncharacterized LOC441052 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:172823942-172824554 Neighboring gene polypeptide N-acetylgalactosaminyltransferase like 6 Neighboring gene Sharpr-MPRA regulatory region 892 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:172914347-172914881 Neighboring gene uncharacterized LOC124900811

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147157.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC074254, AC093764
    Related
    ENST00000508977.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    171602683..171638763 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    174954980..174991042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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